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H. Keffer Hartline and lateral inhibition



Haldan Keffer Hartline (1903–1983) might always have been destined for a life in biological research [1].  His parents were highly educated teachers at the Bloomsburg State Normal School in Pennsylvania; his father was a field naturalist with a Masters degree, with experience at the Cold Spring Harbor marine biology station and who studied for some time in Bonn and Heidelberg.  His mother, an English teacher at the school, also had a keen interest in botany.  From early on, Hartline had a researcher’s attitude towards natural phenomena in which others might have taken only a passing interest: after observing that bright sparks rising from a fire left shorter trails than dim sparks, he began experiments at home to explore persistence of vision.
As an undergraduate at Lafayette college (ca. 1921) he began working with small land isopods (small woodlice), quantifying their light-avoidance behaviour.  This early research led to his first published paper at the age of twenty [2].  While studying medicine at Johns Hopkins University, he was allowed access to the Department of Physiology’s string galvanometer — an enormous device for recording extremely small electrical currents.  Hartline used the instrument to record retinal action potentials in small vertebrates.  One day he caught a fly that was buzzing around his laboratory, and mounted his electrodes to record from an ommatidium — Hartline quickly found that retinal potentials from the fly were ten times larger than those in the cat, and shifted his focus to visual responses in invertebrates.
Hartline began his work with the horseshoe crab Limulus at the Woods Hole marine biological station, where he continued his research on shadow reactions and dark adaptation in small marine creatures.  Unsatisfied with the mechanically-amplified responses of the string galvanometer, he built his own three-valve amplifier from scratch to drive a Matthews oscillograph [3].  The increased sensitivity allowed Hartline’s work on retinal action potentials to progress to recordings from single fibres in the Limulus optic nerve.  After quantifying the responses of single units to spots of illumination, he noticed that ambient light in the laboratory reduced the responses of an ommatidium and attached fibre prepared for recording.  It was a short step to show that shading neighbouring ommatidia restored the activity of the isolated fibre.  Hartline and his lab explored the dynamics and mechanism of this phenomena as an early description of lateral inhibition in the retina (beaten to print by Kuffler working in the cat and Barlow in the frog) [4, 5].   Such was their zeal in precisely quantifying the effect of lateral interactions that they produced a set of simultaneous equations that accurately describe the responses of a set of nearby ommatidia.
Two productive decades followed their initial observations; their work cemented the idea that the retina does not merely transmit counts of incident photons to the brain, but actively filters and processes incoming stimuli.  The visual phenomena of Mach bands (see figures at left) illustrate that our perception of the visual world is illusory from the moment of sensation. 
Based on the work of Hartline and others in the retina, the concept of lateral inhibition has been extraordinarily pervasive in neuroscience.  Models describing not only visual processing [8], but also development of cortical maps [9] and dynamic activity in cortex [10] all stem from Hartline’s observations.  In the retina, lateral inhibition underlies spatial and temporal contrast enhancement, as described in detail by Hartline and his colleagues.  In networks of neurons, lateral inhibition can perform sharpening of neural representation, decision making via competitive mechanisms, auto-associative memory storage, noise rejection, and so on [6].  Many abstract models of cortex adopted widespread inhibition as an anatomical fait accompli, and continue to do so in spite of the weight of evidence against long-range inhibition in cortex.  Aside from consistency with existing theoretical literature, this is probably due to the computational power conferred by lateral inhibitory interactions.
Hartline was awarded the Nobel Prize in Physiology or Medicine in 1967, along with Ragnar Granit and George Wald, for his “discoveries of the most fundamental principles for data processing in neuronal networks which serve sensory functions. In the case of vision they are vital for the understanding of the mechanisms underlying perceptions of brightness, form and movement.” [7]

Mach Bands In the 1860s, the Austrian physicist Ernst Mach recognised that the illumination at a point on the retina is not perceived objectively, but only in reference to its neighbours.  The optical illusion shown at left illustrates this phenomenon: although there is a simple linear gradient from light to dark in the centre of the image, we perceive a brighter band at the left edge of the gradient, and a darker band at the right edge.  Physiologically this effect is due to the changing influence of surround inhibition across the image.  Mach interpreted this phenomenon quite philosophically, claiming that our perception of the world is always relative to other stimuli; that our impression of unchanging events is actively weakened, with the effect of enhancing the importance of events that change temporally or spatially.
- D.R. Muir 
References and further reading
[1] R Granitt and F Ratliff, 1985. Haldan Keffer Hartline. 22 December 1903–18 March 1983. Biographical Memoirs of Fellows of the Royal Society 31, pp 262–292.
[2] HK Hartline, 1920. Influence of light of very low intensity on phototropic reactions of animals, J General Physiology 6 (2), pp 137–152.
[3] HK Hartline, 1974. Foreword. In: Studies on excitation and inhibition in the retina, Eds: F Ratliff and HK Hartline, pp xiii–xx. Rockefeller University Press, New York.
[4] HK Hartline, 1949. Inhibition of activity of visual receptors by illuminating nearby retinal areas in the Limulus eye, Federation Proceedings 8 (1), p 69.
[5] HK Hartline, HG Wagner and F Ratliff, 1956. Inhibition in the eye of Limulus, J General Physiology 39 (5), pp 651–673.
[6] RJ Douglas and KAC Martin, 2007. Recurrent neuronal circuits of the neocortex, Current Biology 17 (13), pp R496–R500.
[7] CG Bernhard, 1968. In: Les Prix Nobel en 1967, Ed: R Granit. Nobel Foundation, Stockholm.
[8] G Sperling, 1970. Model of visual adaptation and contrast detection, Perception and Psychophysics 8 (3), pp 143–157.
[9] C von der Malsburg, 1930. Self-organization of orientation sensitive cells in the striate cortex, Kybernetic 14, pp 85–100.
[10] HR Wilson and JD Cowan, 1973. A mathematical theory of the functional dynamics of cortical and thalamic nervous tissue, Kybernetic 13, pp 55–80.

Google summer of code 2012

As a PhD student at INI, I have had the pleasure this summer to 
participate to the Google Summer of Code 2012 
(http://code.google.com/soc/), a worldwide program run by Google that 
funds students to work for three months for open source organisations as 
software developers. Among the participating 180 open source 
organisations this year, there have been many projects related to the 
development of tools for scientific purposes, such as bioinformatic 
software, crowdsourcing biological games to involve the general public, 
libraries for hardware and sensors, and even the International 
Neuroinformatics Coordinating Facility (http://www.incf.org/) has hosted 
6 interesting projects.

Personally I have contributed to the development of an application for 
Cytoscape 3.0 (http://www.cytoscape.org/) to support visualisation and 
analysis of dynamic networks. Cytoscape is a powerful tool to visualise 
network data in the form of graphs with nodes, edges, and attributes, 
but until now focused mainly on static data. Developing the software 
infrastructure to deal with dynamic data, that is graphs that change in 
time, while the main code of Cytoscape 3.0 was under active development, 
has been an interesting - and successful- challenge.

http://www.youtube.com/watch?v=R6RkMQpOmDs

The ability to visualize and understand dynamic data is very important 
in our own research, which addresses how genetic regulatory programs 
orchestrate the development of cortical architectures in different 
species. The development of open source tools to address this type of 
data is not only of personal interest, but is also directed to reach a 
broader scientific community, and possibly involve more people in the 
future of this project. I'm looking forward to what the next Google 
Summer of Code has to bring!
 
- S. Pfister 

Two questions on VISION and OLFACTION


As a human, I know that I’m a very visual creature, spending most of my work hours reading papers (cough) and examining interesting objects in my visual field (ahem). A greater proportion of the information that the human brain has to process comes from the visual system. Most of our memories are stored as visual imagery. Taking this into account, when one compares the anatomical structures and connectivity of the visual system to the olfactory system, which processes the sense of smell, one finds a curious imbalance: the olfactory system seems to be directly connected to our emotion-cognitive brain structures such as the Amygdala and the Hypothalamus, as well as the more decision oriented frontal cortex, and even more astonishingly, it is the only sensory system which has – in its sensory layer in the epithelium of our nose – the ability to replace and renew olfactory sensory neurons. The visual system, or for that matter any other sensory system, does not possess these special characteristics. The direct connectivity to the Amygdala probably allows us to assign positive or negative associations to certain smells which directly influences our behavior towards them. We know that the smell of something putrid will invoke an immediate aversive response from us (or any other animal), and a unique smell, like the smell of fresh linen, can instantly and almost involuntarily trigger a recall of memories from the remote past. Here in lies the first of my two questions, why does visual input lag behind olfactory input in stimulating behavior directly and effectively? Does the answer lie in a stronghold maintained by the evolutionary older olfactory system?

It is obvious that the olfactory system is of great importance to many species of animals: insects such as the widely studied fruit fly, rodents such as mice, and our very own best friend the dog, are all highly dependent on their sense of smell for survival, and it is well known that their sense of smell is much more refined and has a much larger range than ours; for example, the sensory epithelium of a dog has a surface area forty times that of humans. Through the course of evolution, as animals moved to land from water bodies, the greater variety of smells they encountered on land required a larger and more complex olfactory system to be able to perceive and discriminate smells. This is the reason why fish possess fewer olfactory coding genes (about 100) than mice (1000 genes, the work of Nobel laureates Axel and Buck). There is a certain trend, in our species and related species such as the Gorilla, to have become less dependent on olfaction and more dependent on vision; evidence comes from studies in loss of gene function (carta.anthropogeny.org). So it seems that evolution is driving us toward becoming more and more visually oriented animals. Here’s a surprise though: a recent study by Bastir and colleagues (Nature communications 2011) reports an increase in olfactory bulb and orbito-frontal cortex size (both involved in olfactory processing) in modern humans compared to Neanderthals. As we all know, Neanderthals are extinct and we are thriving! I wouldn’t want to read too far into the results but they do seem to confuse the evolutionary trend!

The second question is more of a wild conjecture into the remote unknown future of  humanity: how will our brain look like in another, say ten thousand years, assuming the rate of evolutionary changes in the brain is increasing and we haven’t done anything calamitously stupid? Will the evolutionary relaxation on selection of the olfactory system result in a changed anatomy? Will the visual system start projecting directly to our emotive and cognitive structures?  Will the olfactory system shrink in comparison? Will we start regenerating cells in our retina and lose this ability in our nasal epithelium? It would be sad though, because I definitely love the smell of tea and Indian food, and I don’t think their appearance alone would suffice ;-)

- G. Narula

Beware of fashion...


Reading through yet another study (Huebner and Gegenfurtner, 2012) using natural images as stimuli, I started thinking about their contribution to our understanding of visual processes. Using natural images has undeniably shown that current models of visual processing are still incomplete. Indeed, most model based predictions of neuronal responses to natural images are poor, including for cells in primate primary visual cortex (V1), a cortical area considered by many to be relatively “well-understood”.
Knowing that a model is inaccurate or incomplete and gaining insight into the causes of its failures are, however, two very different things. In my opinion, using “natural” stimuli has hardly, if at all, contributed to the latter. I do believe that the most important results concerning the functional properties of visual neurons have been obtained, and will for a while continue to be, using simple stimuli. Sinusoidal gratings, for example, allow us to use the powerful tools of linear system theory , to systematically study failures of simple linear models, and to uncover the important non-linearities in visual signal processing.

Why is it then that the number of studies using natural images has grown so much in recent years (by my counting, only 2 papers used them in 1990, they were 62 in 2010, and there are already 62 half-way through 2012)? I think it became a fashion due to the increasing ease with which these stimuli can be stored, displayed and manipulated, and to the erroneous notion that using “natural” stimuli would bring us closer an understanding of what neurons do outside of the lab, in “nature”. Such a notion would make us  believe that Galileo Galilei should not have performed   his inclined plane experiments to study mechanics. Instead, he should have saved the trouble by simply observing falling bodies in nature, thereby gaining simultaneous insight into the laws of motion, inertia, acceleration, gravitation and turbulent  air resistance. Well, the inclined plane experiments are now considered seminal in mechanics and a monument of reductionist science, the fabled dropping of objects from the tower of Pisa apparently never  even occurred...

It may be appealing to use complex stimuli to study the complexity of nature, it may even become very fashionable, but the complexity may be so high that it masks the underlying processes. Similar thoughts occur to me when I hear people criticizing such old fashioned methods as extracellular single cell recordings. It is of course much more fashionable to use optogenetics or two-photon calcium imaging. The main question for me is whether we have learned everything we can learn from the old methods using simple stimuli. New methods are great but it doesn’t mean old ones should be abandoned…

- D. Kiper

L. Guttmann, INI, and the Paralympics

The opening ceremony of the Olympics gave a potted British history 
that disturbed me because it managed to leave science out- the token 
appearance of Tim Berners-Lee apart. The opening ceremony of the 
Paralympics, redressed the balance and put science at the forefront, 
appropriately so given its essential contribution to medicine. The 
Paralympics in London brings back many memories, not least because INI 
has a link to its founder, Ludwig Guttmann, a refugee German Jew who 
single-handedly revolutionised the treatment and rehabilitation of 
people with spinal injuries through his work as Director of the National 
Spinal Injury Centre at Stoke Mandeville, near Oxford, UK. For many 
years John Anderson, Rodney Douglas and I worked with David Whitteridge, 
whose portrait hangs in the INI entrance hall. As a neurophysiologist, 
Whitteridge worked with Ludwig Guttmann in the 1940s and 1950s, studying 
spinal reflexes. He told us many anecdotes about Guttmann, e.g. his 
injunction: 'The first duty of a paraplegic patient is to cheer up his 
visitors!' Whitteridge sponsored Guttmann's election to the Royal 
Society in 1976 and after Guttmann died in 1980, he wrote a moving 
account of his extraordinary life and achievements in a Biographical 
Memoir of the Royal Society 
(http://rsbm.royalsocietypublishing.org/content/29/226). Throughout my 
own childhood I had direct experience of the able-ness of the 'disabled' 
since my father taught at a blind school and later founded a school for 
so-called 'cerebral palsied' children, where they too had an annual 
sports day. Like the Stoke Mandeville Games, which later became the 
Paralympics, sports for blind and brain damaged children was a very 
central and fulfilling part of their lives. One legacy of Guttmann's 
humanity and vision - the London Paralympics - currently enthralls and 
inspires millions worldwide.

- K. Martin